View source for ModBase

{{infobox biodatabase
|title = ModBase
|logo =[[File:Database.png]]
|description = Database of comparative protein structure models
|scope =
|organism =
|center =[[University of California at San Francisco]]
|laboratory = Department of Bioengineering and Therapeutic Sciences
|author = Ursula Pieper, Eswar Narayanan, Ben Webb, Andrej Sali
|citation = Pieper  & al. (2011)<ref name="pmid21097780"/>
|released = 1998
|standard =
|format =
|url = http://salilab.org/modbase
|download = ftp://salilab.org/databases/modbase
|webservice = http://salilab.org/modweb
|sql =
|sparql =
|webapp =
|standalone =
|license =
|versioning =
|frequency =
|curation =
|bookmark =
|version=
}}'''ModBase''' is a database of annotated [[Homology modeling|comparative protein structure]] models, containing models for more than 3.8 million unique protein sequences.<ref name="pmid21097780">{{cite journal |last=Pieper|first=Ursula |author2=Webb Benjamin M |author3=Barkan David T |author4=Schneidman-Duhovny Dina |author5=Schlessinger Avner |author6=Braberg Hannes |author7=Yang Zheng |author8=Meng Elaine C |author9=Pettersen Eric F |author10=Huang Conrad C |author11=Datta Ruchira S |author12=Sampathkumar Parthasarathy |author13=Madhusudhan Mallur S |author14=Sjölander Kimmen |author15=Ferrin Thomas E |author16=Burley Stephen K |author17=Sali Andrej |date=Jan 2011|title=ModBase, a database of annotated comparative protein structure models, and associated resources|journal = Nucleic Acids Res.|volume=39|issue=Database issue|pages=D465-74|location = England| pmid = 21097780|doi = 10.1093/nar/gkq1091| pmc =3013688 }}</ref> Models are created by the [[comparative modeling]] pipeline ModPipe which relies on the [[MODELLER]] program. 
ModBase is developed in the laboratory of [[Andrej Sali]] at [[UCSF]]. ModBase models are also accessible through the Protein Model Portal.

==See also==
* [[Homology modeling]]

==References==
<references/>

==External links==
* http://salilab.org/modbase

[[Category:Protein databases]]
[[Category:Protein methods]]
[[Category:Protein structure]]


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